journal.bib
@article{Burlinson23-EIT,
author = {David Burlinson and Matthew Mcquaigue and Alec Goncharow
and Kalpathi Subramanian and Erik Saule and Jamie Payton
and Paula Goolkasian},
title = {BRIDGES: Real World Data, Assignments and Visualizations
To Engage and Motivate CS Majors},
journal = {Education and Information Technologies},
year = {2023},
optkey = {},
doi = {10.1007/s10639-023-11958-4},
keywords = {CS education, bridges, engagement},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/eit23-BMGSSPG.pdf},
optnumber = {},
optpages = {},
optmonth = {},
optnote = {},
optannote = {}
}
@article{Goncharow21-JPDC,
author = {Goncharow, Alec and Mcquaigue, Matthew and Saule, Erik
and Subramanian, Kalpathi and Goolkasian, Paula and Payton,
Jamie},
title = {CS-Materials: A System for Classifying and Analyzing
Pedagogical Materials to Improve Adoption of Parallel and
Distributed Computing Topics in Early CS Courses},
journal = {Journal of Parallel and Distributed Computing},
doi = {10.1016/j.jpdc.2021.05.014},
year = {2021},
keywords = {CS education, alignment, csmaterials},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc21-GMSSGP.pdf},
optannote = {}
}
@article{Naderi20-BDM,
author = {Naderi Yeganeh, Pourya and Christine Richardson and Erik
Saule and Ann Loraine and Mostafavi, M. Taghi },
title = {Revisiting the Use of Graph Centrality Models in
Biological Pathway Analysis },
journal = {BioData Mining},
year = {2020},
doi = {10.1186/s13040-020-00214-x},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/bdm20-YRSLM.pdf},
optkey = {},
optvolume = {},
optnumber = {},
optpages = {},
optmonth = {},
optnote = {},
optannote = {}
}
@article{Saryiuce17-TKDD,
author = {Ahmet Erdem Sar{\i}y{\"{u}}ce and Kamer Kaya and Erik
Saule and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Graph Manipulations for Fast Centrality Computation},
journal = {ACM Transactions on Knowledge Discovery from Data (TKDD)},
year = {2017},
volume = {11},
issue = {3},
doi = {10.1145/3022668},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/tkdd17-SKSC.pdf},
keywords = {network analysis, betweenness centrality, closeness
centrality, centrality, algorithms}
}
@article{Dytrych16-PRL,
author = {T. Dytrych and P. Maris and K. D. Launey and J. P. Draayer
and J. P. Vary and D. Langr and E. Saule and M. A. Caprio
and {\"{U}}. {\c{C}}ataly{\"{u}}rek and M. Sosonkina},
title = {Efficacy of the SU(3) scheme for ab initio large-scale
calculations beyond the lightest nuclei},
journal = {Computer Physics Communications},
year = {2016},
volume = {207},
month = oct,
pages = {202--210},
doi = {10.1016/j.cpc.2016.06.006},
keywords = {physics}
}
@article{Sariyuce14-JPDC,
author = {Ahmet Erdem Sar{\i}y{\"{u}}ce and Erik Saule and Kamer
Kaya and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Regularizing Graph Centrality Computations},
year = {2015},
journal = {Journal of Parallel and Distributed Computing},
doi = {10.1016/j.jpdc.2014.07.006},
volume = {76},
month = feb,
pages = {106--119},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc14-SSKC.pdf},
keywords = {network analysis, centrality, SIMD, GPU, Xeon Phi, shared
memory, closeness centrality, betweenness centrality}
}
@article{Sariyuce15-PARCO,
author = {Ahmet Erdem Sar{\i}y{\"{u}}ce and Erik Saule and Kamer
Kaya and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Incremental Closeness Centrality in Distributed Memory},
year = {2015},
journal = {Parallel Computing},
volume = {47},
month = aug,
pages = {3-18},
doi = {10.1016/j.parco.2015.01.003},
pdf = {http://webpages.uncc.edu/~esaule/public-website/papers/parco15-SSKC.pdf},
url = {http://authors.elsevier.com/sd/article/S0167819115000101},
keywords = {network analysis, centrality, closeness centrality,
incremental, pipeline, datacutter, distributed memory,
shared memory}
}
@article{Kucuktunc14-TIST,
author = {Onur K{\"{u}}{\c{c}}{\"{u}}ktun{\c{c}} and Erik Saule and
Kamer Kaya and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Diversifying Citation Recommendations},
journal = {ACM Transactions on Intelligent Systems and Technology},
year = {2014},
volume = {5},
number = {4},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/acmtist14-KSKC.pdf},
keywords = {theadvisor, academic network, diversity, network analysis,
page rank}
}
@article{Jung14-SP,
author = {Myoungsoo Jung and Ellis H. Wilson III and Wonil Choi and
John Shalf and Hasan Metin Aktulga and Chao Yang and Erik
Saule and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and Mahmut
Kandemir},
title = {Exploring the Future of Out-Of-Core Computing with
Compute-Local Non-Volatile Memory},
journal = {Scientific Programming},
year = {2014},
volume = {22},
number = {2},
pages = {125-139},
doi = {10.3233/SPR-140384},
url = {http://iospress.metapress.com/content/t5805w1557614624/},
keywords = {out-of-core}
}
@article{Maris13-JPCS,
author = {Pieter Maris and H Metin Aktulga and Sven Binder and
Angelo Calci and {\"{U}}mit V {\c{C}}ataly{\"{u}}rek and
Joachim Langhammer and Esmond Ng and Erik Saule and Robert
Roth and James P Vary and Chao Yang},
title = {No Core CI calculations for light nuclei with chiral 2-
and 3-body forces},
journal = {Journal of Physics: Conference Series},
volume = {454},
number = {1},
pages = {012063},
publisherurl = {http://stacks.iop.org/1742-6596/454/i=1/a=012063},
year = {2013},
doi = {10.1088/1742-6596/454/1/012063},
optabstract = {The atomic nucleus is a self-bound system of strongly
interacting nucleons. In No-Core Configuration Interaction
calculations , the nuclear wavefunction is expanded in
Slater determinants of single-nucleon wavefunctions
(Configurations), and the many-body Schrödinger equation
becomes a large sparse matrix problem. The challenge is to
reach numerical convergence to within quantified numerical
uncertainties for physical observables using finite
truncations of the infinite-dimensional basis space. We
discuss strategies for constructing and solving the
resulting large sparse matrices for a set of low-lying
eigenvalues and eigenvectors on current multicore computer
architectures. Several of these strategies have been
implemented in the code MFDn, a hybrid MPI/OpenMP Fortran
code for ab initio nuclear structure calculations that
scales well to over 200,000 cores. We discuss how the
similarity renormalization group can be used to improve the
numerical convergence. We present results for excitation
energies and other selected observables for 8 Be and 12 C
using realistic 2- and 3-body forces obtained from chiral
perturbation theory. Finally, we demonstrate that
collective phenomena such as rotational band structures can
emerge from these microscopic calculations.},
keywords = {physics}
}
@article{Kucuktunc13-SNAM,
author = {Onur K{\"{u}}{\c{c}}{\"{u}}ktun{\c{c}} and Kamer Kaya and
Erik Saule and {\"{U}}mit V. {\c{C}}ataly{\"{u}}rek},
title = {Fast Recommendation on Bibliographic Networks with
Sparse-Matrix Ordering and Partitioning},
journal = {Social Network Analysis and Mining},
year = {2013},
month = dec,
volume = {3},
number = {4},
pages = {1097--1111},
doi = {10.1007/s13278-013-0106-z},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/snam13-KKSC.pdf},
keywords = {network analysis, theadvisor, partitioning, spmv, page
rank}
}
@article{Dytrych13-PRL,
author = {T. Dytrych and K. D. Launey and J. P. Draayer and P. Maris
and J. P. Vary and E. Saule and {\"{U}}.
{\c{C}}ataly{\"{u}}rek and M. Sosonkina and D. Langr and M.
A. Caprio},
title = {Collective Modes in Light Nuclei from First Principles},
journal = {Physical Review Letters},
volume = {111},
number = {25},
doi = {10.1103/PhysRevLett.111.252501},
month = dec,
year = {2013},
keywords = {physics}
}
@article{Benoit13-ACMCS,
author = {Anne Benoit and {\"{U}}mit {\c{C}}ataly{\"{u}}rek and Yves
Robert and Erik Saule},
title = {{A Survey of Pipelined Workflow Scheduling: Models and
Algorithms}},
journal = {ACM Computing Surveys},
year = {2013},
volume = {45},
number = {4},
month = aug,
doi = {10.1145/2501654.2501664},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/acmcs12-BCRS.pdf},
keywords = {scheduling, throughput, latency, multiobjective,
pipeline}
}
@article{SBC12-jpdc,
author = {Erik Saule and Doruk Bozdag and {\"{U}}mit V.
{\c{C}}ataly{\"{u}}rek},
title = {Optimizing the maximum stretch of independent tasks on a
cluster : From sequential tasks to moldable tasks},
journal = {Journal of Parallel and Distributed Computing},
year = {2012},
volume = {72},
number = {4},
month = apr,
pages = {489--503},
doi = {10.1016/j.jpdc.2011.12.007},
outerurl = {http://www.sciencedirect.com/science/article/pii/S0743731511002474},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc12-SBC.pdf},
keywords = {scheduling, sequential task, moldable task, stretch, max
stretch, flow, approximation algorithms }
}
@article{Saule12-jpdc-spart,
author = {Erik Saule and Erdeniz O. Bas and Umit V. Catalyurek},
title = {Load-Balancing Spatially Located Computations using
Rectangular Partitions},
journal = {Journal of Parallel and Distributed Computing},
year = {2012},
doi = {10.1016/j.jpdc.2012.05.013},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc12-EBC.pdf},
keywords = {load balancing, partitioning, approximation algorithms,
exact algorithm}
}
@article{JST12-jpdc,
author = {Emmanuel Jeannot and Erik Saule and Denis Trystram},
title = {Optimizing Performance and Reliability on Heterogeneous
Parallel Systems: Approximation Algorithms and Heuristics},
journal = {Journal of Parallel and Distributed Computing},
year = {2012},
volume = 72,
number = 2,
month = feb,
pages = {268 -- 280},
doi = {http://dx.doi.org/10.1016/j.jpdc.2011.11.003},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc12-JST.pdf},
keywords = {scheduling, reliability, makespan, multiobjective,
approximation algorithms}
}
@article{Hartley-12-PARCO,
author = {Timothy D. R. Hartley and Erik Saule and Umit V.
Catalyurek},
title = {Improving Performance of Adaptive Component-Based Dataflow
Middleware},
journal = {Parallel Computing},
doi = {10.1016/j.parco.2012.03.005},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/parco12-HSC.pdf},
year = {2012},
volume = {38},
number = {6-7},
pages = {289-309},
keywords = {middleware, gpu, workstealing, datacutter, distributed
memory}
}
@article{ST09-ipl,
author = {Erik Saule and Denis Trystram},
title = {Analyzing Scheduling with Transient Failures},
journal = {Information Processing Letters},
year = {2009},
optkey = {},
volume = {109},
doi = {http://dx.doi.org/10.1016/j.ipl.2009.01.019},
number = {11},
pages = {539--542},
month = may,
url = {http://webpages.uncc.edu/~esaule/public-website/papers/ipl09-ST.pdf},
optannote = {},
keywords = {scheduling, reliability, makespan, dynamic programming,
approximation algorithms}
}
@article{GST09,
author = {Alain Girault and Erik Saule and Denis Trystram},
title = {Reliability versus performance for critical applications},
journal = {Journal of Parallel and Distributed Computing},
year = {2009},
optkey = {},
volume = {69},
number = {3},
pages = {326--336},
month = mar,
doi = {10.1016/j.jpdc.2008.11.002},
url = {http://webpages.uncc.edu/~esaule/public-website/papers/jpdc09-GST.pdf},
optnote = {},
optannote = {},
keywords = {scheduling, reliability, makespan, multiobjective}
}